SNP Report
Basic Infomation
| Name | rs7306684 dbSNP |
|---|---|
| Location | chr:12,40750820 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 59)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1035812 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1035813 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10732751 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10748040 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10784518 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10784528 | 0.80[EUR][1000 genomes] |
| rs10784536 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12306060 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1365763 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1365764 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1365765 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1365766 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1427271 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1427272 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1427273 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17461964 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2162472 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2404835 | 0.95[CHB][hapmap] |
| rs2404836 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2896978 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3789330 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3943893 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4465428 | 0.85[JPT][hapmap] |
| rs4767970 | 0.91[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4767971 | 0.80[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs4767972 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4768231 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4768232 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4768233 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4768234 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4768235 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs5017705 | 0.82[CHB][hapmap] |
| rs7131694 | 0.80[EUR][1000 genomes] |
| rs7137437 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs715402 | 0.80[EUR][1000 genomes] |
| rs7294952 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7294958 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7296657 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7306545 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7307310 | 0.80[EUR][1000 genomes] |
| rs7308626 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7311247 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7312497 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7313525 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7313895 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7314455 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7314863 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7954061 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7956787 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7956898 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7957151 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7962116 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7963086 | 0.80[EUR][1000 genomes] |
| rs7963697 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7963987 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7971919 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7976724 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs890575 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs919175 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014