SNP Report

Basic Infomation

Name	rs7308193 dbSNP
Location	chr:12,40665227
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 73)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10467144	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs10467146	0.87[CEU][hapmap]
rs10735931	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs10748029	0.85[ASN][1000 genomes]
rs10748030	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs10748033	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs10748034	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs10784486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784501	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs10784503	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs10784504	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs10784506	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs10784509	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs10784548	0.87[CEU][hapmap]
rs10784585	0.95[CEU][hapmap]
rs10878290	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10878358	0.85[ASN][1000 genomes]
rs10878368	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs10878371	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs10878377	0.95[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10878441	0.83[CEU][hapmap]
rs11176013	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs12314982	0.88[CEU][hapmap]
rs12426362	0.88[CEU][hapmap]
rs1427263	0.91[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1427264	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs1427265	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs1427266	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs1427267	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17466605	0.88[CEU][hapmap]
rs1896252	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs1896253	0.87[CHB][hapmap]
rs1896254	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs2069228	0.92[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap]
rs2081700	0.92[CEU][hapmap]
rs2081701	0.92[CEU][hapmap]
rs2114568	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs2114569	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs2162469	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs2896975	0.92[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2896982	0.88[CEU][hapmap]
rs3761863	0.87[CEU][hapmap]
rs3886747	0.87[CEU][hapmap]
rs4280068	0.88[CEU][hapmap]
rs4310676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4483664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767969	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs4767973	0.88[CEU][hapmap]
rs4768224	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768227	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs4768229	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs4768236	0.87[CEU][hapmap]
rs4768237	0.88[CEU][hapmap]
rs7134408	0.88[CEU][hapmap]
rs7137160	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs7137665	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs721709	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs721711	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs721712	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs721713	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs7298930	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs7302503	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7305344	0.96[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7307276	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs7310390	0.88[CEU][hapmap]
rs7488873	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7954300	0.88[CEU][hapmap]
rs7954318	0.88[CEU][hapmap]
rs7957057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7973479	0.83[CHB][hapmap]
rs7975124	0.87[CEU][hapmap]
rs7979341	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs963243	0.92[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)