SNP Report

Basic Infomation

Name	rs7488873 dbSNP
Location	chr:12,40674594
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10467144	0.85[ASN][1000 genomes]
rs10735931	0.86[ASN][1000 genomes]
rs10748029	0.85[ASN][1000 genomes]
rs10748030	0.86[ASN][1000 genomes]
rs10748033	0.86[ASN][1000 genomes]
rs10748034	0.86[ASN][1000 genomes]
rs10784486	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10784501	0.86[ASN][1000 genomes]
rs10784503	0.86[ASN][1000 genomes]
rs10784504	0.86[ASN][1000 genomes]
rs10784506	0.86[ASN][1000 genomes]
rs10784509	0.86[ASN][1000 genomes]
rs10878290	0.83[ASN][1000 genomes]
rs10878358	0.85[ASN][1000 genomes]
rs10878368	0.86[ASN][1000 genomes]
rs10878371	0.86[ASN][1000 genomes]
rs10878377	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11176013	0.86[ASN][1000 genomes]
rs1427263	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1427264	0.86[ASN][1000 genomes]
rs1427265	0.86[ASN][1000 genomes]
rs1427266	0.86[ASN][1000 genomes]
rs1427267	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1896252	0.86[ASN][1000 genomes]
rs1896254	0.86[ASN][1000 genomes]
rs2114568	0.86[ASN][1000 genomes]
rs2114569	0.86[ASN][1000 genomes]
rs2162469	0.86[ASN][1000 genomes]
rs2896975	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4310676	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4483664	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4767969	0.86[ASN][1000 genomes]
rs4768224	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4768227	0.86[ASN][1000 genomes]
rs4768229	0.86[ASN][1000 genomes]
rs7137160	0.85[ASN][1000 genomes]
rs7137665	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs721709	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs721711	0.86[ASN][1000 genomes]
rs721712	0.86[ASN][1000 genomes]
rs721713	0.86[ASN][1000 genomes]
rs7298930	0.86[ASN][1000 genomes]
rs7302503	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7305344	0.87[ASN][1000 genomes]
rs7307276	0.86[ASN][1000 genomes]
rs7308193	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7957057	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7979341	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs963243	0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)