SNP Report
Basic Infomation
| Name | rs12311273 dbSNP |
|---|---|
| Location | chr:12,40741617 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10784470 | 0.82[ASN][1000 genomes] |
| rs10784522 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10878405 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11175784 | 0.81[ASN][1000 genomes] |
| rs11175787 | 0.83[ASN][1000 genomes] |
| rs11175836 | 0.82[ASN][1000 genomes] |
| rs11175845 | 0.83[ASN][1000 genomes] |
| rs11175847 | 0.83[ASN][1000 genomes] |
| rs11175862 | 0.82[ASN][1000 genomes] |
| rs11175911 | 0.83[ASN][1000 genomes] |
| rs11175922 | 0.83[ASN][1000 genomes] |
| rs11176030 | 0.92[ASN][1000 genomes] |
| rs11564148 | 0.89[ASN][1000 genomes] |
| rs12146857 | 0.82[ASN][1000 genomes] |
| rs12367542 | 0.92[ASN][1000 genomes] |
| rs12368227 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12369882 | 0.81[ASN][1000 genomes] |
| rs12820920 | 0.83[ASN][1000 genomes] |
| rs17443815 | 0.83[ASN][1000 genomes] |
| rs17444124 | 0.93[ASN][1000 genomes] |
| rs17519846 | 0.83[ASN][1000 genomes] |
| rs35124455 | 0.84[ASN][1000 genomes] |
| rs4272849 | 0.83[ASN][1000 genomes] |
| rs4768230 | 0.91[ASN][1000 genomes] |
| rs7302841 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7309197 | 0.83[ASN][1000 genomes] |
| rs7957754 | 0.83[ASN][1000 genomes] |
| rs7962011 | 0.82[ASN][1000 genomes] |
| rs7973058 | 0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014