SNP Report

Basic Infomation

Name	rs4413892 dbSNP
Location	chr:9,139330158
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 52)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10870139	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs10870172	0.95[ASN][1000 genomes]
rs11145910	0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs11145916	0.92[ASN][1000 genomes]
rs11145917	0.86[ASN][1000 genomes]
rs11145974	0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs11145986	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11146021	1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1130640	0.95[ASN][1000 genomes]
rs1135314	0.85[JPT][hapmap]
rs11999525	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs11999532	0.93[EUR][1000 genomes]
rs11999609	0.95[EUR][1000 genomes]
rs12002854	0.89[EUR][1000 genomes]
rs12551527	0.94[EUR][1000 genomes]
rs12555241	0.85[EUR][1000 genomes]
rs13283788	0.89[EUR][1000 genomes]
rs13290734	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13295248	0.88[EUR][1000 genomes]
rs13295852	0.92[ASN][1000 genomes]
rs13301660	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2229974	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs33982662	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34302850	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34376913	0.93[EUR][1000 genomes]
rs34619169	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34936112	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34985258	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35135227	0.89[EUR][1000 genomes]
rs35526483	0.95[EUR][1000 genomes]
rs35531907	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35857370	0.94[EUR][1000 genomes]
rs35873563	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36101132	0.93[EUR][1000 genomes]
rs3812578	0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs3812591	0.85[JPT][hapmap];0.94[EUR][1000 genomes]
rs3812594	1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes]
rs3812595	1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs3923776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4382584	0.89[EUR][1000 genomes]
rs4400499	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs4418446	0.87[ASN][1000 genomes]
rs55824202	0.94[EUR][1000 genomes]
rs563	0.85[JPT][hapmap]
rs57994353	0.87[EUR][1000 genomes]
rs66477686	0.93[EUR][1000 genomes]
rs67220311	0.93[EUR][1000 genomes]
rs72775768	0.86[ASN][1000 genomes]
rs72775772	0.94[EUR][1000 genomes]
rs72775778	0.93[EUR][1000 genomes]
rs73566945	0.91[ASN][1000 genomes]
rs9314867	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SEC16A	Distal transcriptional regulation
EGFL7	Distal transcriptional regulation
C9orf163	Distal transcriptional regulation
RABL6	Distal transcriptional regulation
KIAA1984-AS1	Distal transcriptional regulation
INPP5E	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)