SNP Report
Name | rs4413892   dbSNP |
---|---|
Location | chr:9,139330158 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10870139 | 0.85[JPT][hapmap];0.89[ASN][1000 genomes] |
rs10870172 | 0.95[ASN][1000 genomes] |
rs11145910 | 0.85[JPT][hapmap];0.92[ASN][1000 genomes] |
rs11145916 | 0.92[ASN][1000 genomes] |
rs11145917 | 0.86[ASN][1000 genomes] |
rs11145974 | 0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
rs11145986 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11146021 | 1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1130640 | 0.95[ASN][1000 genomes] |
rs1135314 | 0.85[JPT][hapmap] |
rs11999525 | 1.00[YRI][hapmap];0.85[EUR][1000 genomes] |
rs11999532 | 0.93[EUR][1000 genomes] |
rs11999609 | 0.95[EUR][1000 genomes] |
rs12002854 | 0.89[EUR][1000 genomes] |
rs12551527 | 0.94[EUR][1000 genomes] |
rs12555241 | 0.85[EUR][1000 genomes] |
rs13283788 | 0.89[EUR][1000 genomes] |
rs13290734 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs13295248 | 0.88[EUR][1000 genomes] |
rs13295852 | 0.92[ASN][1000 genomes] |
rs13301660 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2229974 | 1.00[CHB][hapmap];0.85[JPT][hapmap] |
rs33982662 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34302850 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs34376913 | 0.93[EUR][1000 genomes] |
rs34619169 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs34936112 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs34985258 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35135227 | 0.89[EUR][1000 genomes] |
rs35526483 | 0.95[EUR][1000 genomes] |
rs35531907 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35857370 | 0.94[EUR][1000 genomes] |
rs35873563 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs36101132 | 0.93[EUR][1000 genomes] |
rs3812578 | 0.85[JPT][hapmap];0.92[ASN][1000 genomes] |
rs3812591 | 0.85[JPT][hapmap];0.94[EUR][1000 genomes] |
rs3812594 | 1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes] |
rs3812595 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs3923776 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4382584 | 0.89[EUR][1000 genomes] |
rs4400499 | 0.85[JPT][hapmap];0.87[ASN][1000 genomes] |
rs4418446 | 0.87[ASN][1000 genomes] |
rs55824202 | 0.94[EUR][1000 genomes] |
rs563 | 0.85[JPT][hapmap] |
rs57994353 | 0.87[EUR][1000 genomes] |
rs66477686 | 0.93[EUR][1000 genomes] |
rs67220311 | 0.93[EUR][1000 genomes] |
rs72775768 | 0.86[ASN][1000 genomes] |
rs72775772 | 0.94[EUR][1000 genomes] |
rs72775778 | 0.93[EUR][1000 genomes] |
rs73566945 | 0.91[ASN][1000 genomes] |
rs9314867 | 1.00[JPT][hapmap] |
Symbol | Regulation type |
---|---|
SEC16A | Distal transcriptional regulation |
EGFL7 | Distal transcriptional regulation |
C9orf163 | Distal transcriptional regulation |
RABL6 | Distal transcriptional regulation |
KIAA1984-AS1 | Distal transcriptional regulation |
INPP5E | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
INPP5E | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014