SNP Report
Basic Infomation
| Name | rs10870139 dbSNP |
|---|---|
| Location | chr:9,139303269 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10448340 | 0.85[AMR][1000 genomes] |
| rs10747043 | 0.92[AMR][1000 genomes] |
| rs10747044 | 0.84[CEU][hapmap];0.83[AMR][1000 genomes] |
| rs10870151 | 0.92[AMR][1000 genomes] |
| rs10870160 | 0.92[AMR][1000 genomes] |
| rs10870166 | 0.84[CEU][hapmap];0.92[AMR][1000 genomes] |
| rs10870171 | 0.92[AMR][1000 genomes] |
| rs10870172 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11145910 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11145916 | 0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11145917 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs11145930 | 0.80[CEU][hapmap] |
| rs11145974 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11145986 | 0.92[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11146021 | 0.83[CEU][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs1130635 | 0.87[CEU][hapmap];0.92[AMR][1000 genomes] |
| rs1130640 | 0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1135314 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13295852 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs33982662 | 0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs34302850 | 0.86[ASN][1000 genomes] |
| rs34619169 | 0.83[ASN][1000 genomes] |
| rs34985258 | 0.89[ASN][1000 genomes] |
| rs35531907 | 0.89[ASN][1000 genomes] |
| rs35873563 | 0.89[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3812578 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3812581 | 0.81[CEU][hapmap];0.92[AMR][1000 genomes] |
| rs3812591 | 0.83[CEU][hapmap] |
| rs3812594 | 0.85[JPT][hapmap] |
| rs3812595 | 0.85[JPT][hapmap] |
| rs3923776 | 0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs4298601 | 0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4400498 | 0.89[AMR][1000 genomes] |
| rs4400499 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4413892 | 0.85[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs4418446 | 0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs563 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs73566945 | 0.81[ASN][1000 genomes] |
| rs9314867 | 0.85[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PMPCA | Proximal transcriptional regulation |
| SDCCAG3 | Proximal transcriptional regulation |
| DNLZ | Distal transcriptional regulation |
| CARD9 | Distal transcriptional regulation |
| C9orf163 | Distal transcriptional regulation |
| SDCCAG3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014