SNP Report
Name | rs4400499   dbSNP |
---|---|
Location | chr:9,139305041 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10448340 | 0.87[AMR][1000 genomes] |
rs10747043 | 0.93[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10747044 | 0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs10870139 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10870151 | 0.93[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10870160 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs10870166 | 0.84[CEU][hapmap];0.82[MEX][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10870171 | 0.93[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10870172 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11145910 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11145916 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11145917 | 1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes] |
rs11145930 | 0.80[CEU][hapmap] |
rs11145974 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11145986 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11146021 | 0.83[CEU][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.87[ASN][1000 genomes] |
rs1130635 | 0.87[CEU][hapmap];0.82[MEX][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs1130640 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1135314 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs13295852 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs33982662 | 0.89[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs34302850 | 0.84[ASN][1000 genomes] |
rs34619169 | 0.81[ASN][1000 genomes] |
rs34985258 | 0.87[ASN][1000 genomes] |
rs35531907 | 0.87[ASN][1000 genomes] |
rs35873563 | 0.90[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs3812578 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs3812581 | 0.84[CEU][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs3812591 | 0.83[CEU][hapmap] |
rs3812594 | 0.85[JPT][hapmap] |
rs3812595 | 0.85[JPT][hapmap] |
rs3923776 | 0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
rs4298601 | 0.92[CEU][hapmap];0.82[AMR][1000 genomes] |
rs4400498 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs4413892 | 0.85[JPT][hapmap];0.87[ASN][1000 genomes] |
rs4418446 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs563 | 0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap] |
rs9314867 | 0.85[JPT][hapmap] |
Symbol | Regulation type |
---|---|
PMPCA | Proximal transcriptional regulation |
SDCCAG3 | Proximal transcriptional regulation |
C17orf76-AS1 | Distal transcriptional regulation |
SNORD49B | Distal transcriptional regulation |
ERMAP | Distal transcriptional regulation |
CCDC23 | Distal transcriptional regulation |
MESDC1 | Distal transcriptional regulation |
C9orf163 | Distal transcriptional regulation |
EGFL7 | Distal transcriptional regulation |
SEC16A | Distal transcriptional regulation |
DNLZ | Distal transcriptional regulation |
CARD9 | Distal transcriptional regulation |
INPP5E | Distal transcriptional regulation |
ATAD2B | Distal transcriptional regulation |
UBXN2A | Distal transcriptional regulation |
NOTCH1 | Distal transcriptional regulation |
ENSG00000237886 | Distal transcriptional regulation |
MIR4674 | Distal transcriptional regulation |
SDCCAG3 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
INPP5E | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014