SNP Report

Basic Infomation

Name	rs4400499 dbSNP
Location	chr:9,139305041
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10448340	0.87[AMR][1000 genomes]
rs10747043	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10747044	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10870139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10870151	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10870160	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10870166	0.84[CEU][hapmap];0.82[MEX][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10870171	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10870172	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11145910	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11145916	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11145917	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes]
rs11145930	0.80[CEU][hapmap]
rs11145974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11145986	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11146021	0.83[CEU][hapmap];0.85[JPT][hapmap];0.90[MEX][hapmap];0.87[ASN][1000 genomes]
rs1130635	0.87[CEU][hapmap];0.82[MEX][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1130640	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1135314	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13295852	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33982662	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34302850	0.84[ASN][1000 genomes]
rs34619169	0.81[ASN][1000 genomes]
rs34985258	0.87[ASN][1000 genomes]
rs35531907	0.87[ASN][1000 genomes]
rs35873563	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3812578	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3812581	0.84[CEU][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3812591	0.83[CEU][hapmap]
rs3812594	0.85[JPT][hapmap]
rs3812595	0.85[JPT][hapmap]
rs3923776	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4298601	0.92[CEU][hapmap];0.82[AMR][1000 genomes]
rs4400498	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4413892	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs4418446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs9314867	0.85[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
PMPCA	Proximal transcriptional regulation
SDCCAG3	Proximal transcriptional regulation
C17orf76-AS1	Distal transcriptional regulation
SNORD49B	Distal transcriptional regulation
ERMAP	Distal transcriptional regulation
CCDC23	Distal transcriptional regulation
MESDC1	Distal transcriptional regulation
C9orf163	Distal transcriptional regulation
EGFL7	Distal transcriptional regulation
SEC16A	Distal transcriptional regulation
DNLZ	Distal transcriptional regulation
CARD9	Distal transcriptional regulation
INPP5E	Distal transcriptional regulation
ATAD2B	Distal transcriptional regulation
UBXN2A	Distal transcriptional regulation
NOTCH1	Distal transcriptional regulation
ENSG00000237886	Distal transcriptional regulation
MIR4674	Distal transcriptional regulation
SDCCAG3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)