SNP Report
Basic Infomation
| Name | rs11145930 dbSNP |
|---|---|
| Location | chr:9,139304016 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10448340 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes] |
| rs10747043 | 0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10747044 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10870139 | 0.80[CEU][hapmap] |
| rs10870151 | 0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10870160 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10870166 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10870171 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11145919 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs11145974 | 0.81[CEU][hapmap] |
| rs1130635 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3812555 | 0.82[CHB][hapmap];0.92[JPT][hapmap] |
| rs3812581 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4298601 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4400498 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4400499 | 0.80[CEU][hapmap] |
| rs4487900 | 0.83[LWK][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PMPCA | Proximal transcriptional regulation |
| SDCCAG3 | Proximal transcriptional regulation |
| C9orf163 | Distal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| DNLZ | Distal transcriptional regulation |
| CARD9 | Distal transcriptional regulation |
| INPP5E | Distal transcriptional regulation |
| SDCCAG3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014