SNP Report
Name | rs11145919   dbSNP |
---|---|
Location | chr:9,139302526 |
Allele | G/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10448340 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes] |
rs10747043 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10747044 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10870151 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10870160 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10870166 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10870171 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11145910 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs11145916 | 0.81[EUR][1000 genomes] |
rs11145930 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes] |
rs1130635 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs3812555 | 0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap] |
rs3812578 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs3812581 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4298601 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs4400498 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PMPCA | Proximal transcriptional regulation |
SDCCAG3 | Proximal transcriptional regulation |
TGIF1 | Distal transcriptional regulation |
DNLZ | Distal transcriptional regulation |
SDCCAG3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014