SNP Report
Basic Infomation
| Name | rs4400498 dbSNP |
|---|---|
| Location | chr:9,139305007 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10448340 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10747043 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10747044 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10870139 | 0.89[AMR][1000 genomes] |
| rs10870151 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10870160 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10870166 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10870171 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10870172 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11145919 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11145930 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11145974 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11145986 | 0.84[AMR][1000 genomes] |
| rs1130635 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1130640 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13295852 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs35873563 | 0.81[AMR][1000 genomes] |
| rs3812581 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4298601 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4400499 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4418446 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PMPCA | Proximal transcriptional regulation |
| SDCCAG3 | Proximal transcriptional regulation |
| C17orf76-AS1 | Distal transcriptional regulation |
| SNORD49B | Distal transcriptional regulation |
| MESDC1 | Distal transcriptional regulation |
| C9orf163 | Distal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| SEC16A | Distal transcriptional regulation |
| DNLZ | Distal transcriptional regulation |
| CARD9 | Distal transcriptional regulation |
| INPP5E | Distal transcriptional regulation |
| ATAD2B | Distal transcriptional regulation |
| UBXN2A | Distal transcriptional regulation |
| NOTCH1 | Distal transcriptional regulation |
| ENSG00000237886 | Distal transcriptional regulation |
| MIR4674 | Distal transcriptional regulation |
| SDCCAG3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014