SNP Report
Basic Infomation
| Name | rs4418446 dbSNP |
|---|---|
| Location | chr:9,139305024 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10448340 | 0.87[AMR][1000 genomes] |
| rs10747043 | 0.93[AMR][1000 genomes] |
| rs10747044 | 0.84[AMR][1000 genomes] |
| rs10870139 | 0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10870151 | 0.93[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs10870160 | 0.93[AMR][1000 genomes] |
| rs10870166 | 0.93[AMR][1000 genomes] |
| rs10870171 | 0.93[AMR][1000 genomes] |
| rs10870172 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11145910 | 0.80[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11145916 | 0.95[ASN][1000 genomes] |
| rs11145917 | 0.89[ASN][1000 genomes] |
| rs11145974 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11145986 | 0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11146021 | 0.87[ASN][1000 genomes] |
| rs1130635 | 0.93[AMR][1000 genomes] |
| rs1130640 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13295852 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs33982662 | 0.89[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34302850 | 0.84[ASN][1000 genomes] |
| rs34619169 | 0.81[ASN][1000 genomes] |
| rs34985258 | 0.87[ASN][1000 genomes] |
| rs35531907 | 0.87[ASN][1000 genomes] |
| rs35873563 | 0.90[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3812578 | 0.95[ASN][1000 genomes] |
| rs3812581 | 0.93[AMR][1000 genomes] |
| rs3923776 | 0.84[ASN][1000 genomes] |
| rs4298601 | 0.82[AMR][1000 genomes] |
| rs4400498 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4400499 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4413892 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PMPCA | Proximal transcriptional regulation |
| SDCCAG3 | Proximal transcriptional regulation |
| C17orf76-AS1 | Distal transcriptional regulation |
| SNORD49B | Distal transcriptional regulation |
| MESDC1 | Distal transcriptional regulation |
| C9orf163 | Distal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| SEC16A | Distal transcriptional regulation |
| DNLZ | Distal transcriptional regulation |
| CARD9 | Distal transcriptional regulation |
| INPP5E | Distal transcriptional regulation |
| ATAD2B | Distal transcriptional regulation |
| UBXN2A | Distal transcriptional regulation |
| NOTCH1 | Distal transcriptional regulation |
| ENSG00000237886 | Distal transcriptional regulation |
| MIR4674 | Distal transcriptional regulation |
| SDCCAG3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014