SNP Report

Basic Infomation

Name	rs10747044 dbSNP
Location	chr:9,139319129
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10448340	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10747043	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10870139	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs10870151	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10870160	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10870165	0.81[YRI][hapmap]
rs10870166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10870171	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10870172	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11145919	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11145930	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11145974	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1130635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1130640	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13295852	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3812555	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs3812581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4298601	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4400498	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4400499	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4418446	0.84[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000228401	Distal transcriptional regulation
INPP5E	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 13)

eQTL related gene	Source
CAPRIN1	SCAN
CARD9	seeQTL
SDCCAG3	Pritchard
INPP5E	Pritchard
CARD9	Pritchard
TMEM141	SCAN
NPDC1	SCAN
ZMYND19	SCAN
RXRA	SCAN
INPP5E	GTEx
INPP5E	GTEx
INPP5E	GTEx
INPP5E	GTEx