SNP Report
Basic Infomation
| Name | rs10870165 dbSNP |
|---|---|
| Location | chr:9,139316601 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747044 | 0.81[YRI][hapmap] |
| rs10781496 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs10781499 | 0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap] |
| rs10781500 | 0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap] |
| rs10781505 | 0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap] |
| rs10781507 | 0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs10781518 | 0.83[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.92[ASN][1000 genomes] |
| rs10870077 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs10870146 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10870201 | 0.84[JPT][hapmap] |
| rs10870202 | 0.84[JPT][hapmap] |
| rs11145750 | 0.87[JPT][hapmap] |
| rs11145903 | 0.84[ASN][1000 genomes] |
| rs11145912 | 0.82[AMR][1000 genomes] |
| rs1132005 | 1.00[JPT][hapmap] |
| rs11794847 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap] |
| rs12380242 | 0.82[EUR][1000 genomes] |
| rs3087886 | 0.80[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[ASN][1000 genomes] |
| rs3812558 | 0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap] |
| rs3812560 | 0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap] |
| rs3812564 | 0.89[CHB][hapmap];0.94[JPT][hapmap] |
| rs3812575 | 0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap] |
| rs3812584 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3829110 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs3829111 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs4077515 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap] |
| rs4487900 | 0.96[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs68002978 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7628 | 0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8413 | 0.84[MEX][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9411205 | 0.89[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SEC16A | Distal transcriptional regulation |
| INPP5E | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 16)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014