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rVarBase
SNP Report
Basic Infomation
Name
rs12380242  
dbSNP
Location
chr:9,139310187
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10870146
0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10870165
0.82[EUR][1000 genomes]
rs1128874
0.86[AMR][1000 genomes]
rs35763810
0.85[AMR][1000 genomes]
rs3812584
0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4487900
0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7628
0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
PMPCA
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)