SNP Report
Basic Infomation
| Name | rs7628 dbSNP |
|---|---|
| Location | chr:9,139318071 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10781518 | 0.92[ASN][1000 genomes] |
| rs10781542 | 0.81[AMR][1000 genomes] |
| rs10870146 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10870165 | 0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10870194 | 0.80[AMR][1000 genomes] |
| rs11145903 | 0.84[ASN][1000 genomes] |
| rs1128874 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12380242 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs3087886 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35763810 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs3812584 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4487900 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7874956 | 0.80[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PMPCA | Proximal transcriptional regulation |
| SEC16A | Distal transcriptional regulation |
| ENSG00000228401 | Distal transcriptional regulation |
| INPP5E | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| INPP5E | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014