SNP Report
Basic Infomation
| Name | rs3087886 dbSNP |
|---|---|
| Location | chr:9,139301583 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10781496 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap] |
| rs10781499 | 0.94[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap] |
| rs10781500 | 0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap] |
| rs10781505 | 0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap] |
| rs10781507 | 0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap] |
| rs10781518 | 0.94[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10870077 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs10870146 | 0.84[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10870149 | 0.89[YRI][hapmap] |
| rs10870165 | 0.80[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[ASN][1000 genomes] |
| rs10870201 | 0.84[JPT][hapmap] |
| rs10870202 | 0.84[JPT][hapmap] |
| rs11145750 | 0.87[JPT][hapmap] |
| rs11145903 | 0.90[ASN][1000 genomes] |
| rs1128905 | 0.92[YRI][hapmap] |
| rs1132005 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs11794847 | 0.95[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap] |
| rs3812556 | 0.83[CHB][hapmap] |
| rs3812558 | 0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs3812560 | 0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap] |
| rs3812564 | 0.95[CHB][hapmap];0.94[JPT][hapmap] |
| rs3812575 | 0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.83[ASN][1000 genomes] |
| rs3812584 | 0.80[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[ASN][1000 genomes] |
| rs3829110 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs3829111 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs4077515 | 0.95[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap] |
| rs4487900 | 0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7628 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9411205 | 0.89[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PMPCA | Proximal transcriptional regulation |
| SDCCAG3 | Proximal transcriptional regulation |
| TGIF1 | Distal transcriptional regulation |
| SDCCAG3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 14)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014