SNP Report
Basic Infomation
| Name | rs3812556 dbSNP |
|---|---|
| Location | chr:9,139261991 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10781496 | 0.85[CHB][hapmap];0.83[CHD][hapmap] |
| rs10781499 | 0.84[CHD][hapmap] |
| rs10781500 | 0.84[CHD][hapmap] |
| rs10781505 | 0.84[CHD][hapmap] |
| rs10781507 | 0.84[CHD][hapmap] |
| rs10781518 | 0.83[CHB][hapmap] |
| rs10870077 | 0.85[CHB][hapmap] |
| rs10870202 | 0.82[CHD][hapmap] |
| rs11794847 | 0.81[CHD][hapmap] |
| rs3087886 | 0.83[CHB][hapmap] |
| rs3812558 | 0.84[CHD][hapmap] |
| rs3812560 | 0.84[CHD][hapmap] |
| rs4077515 | 0.82[CHD][hapmap] |
| rs45592338 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNLZ | Proximal transcriptional regulation |
| SDCCAG3 | Distal transcriptional regulation |
| PMPCA | Distal transcriptional regulation |
| CARD9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014