SNP Report
Basic Infomation
| Name | rs10870202 dbSNP |
|---|---|
| Location | chr:9,139257411 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10781496 | 0.89[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs10781499 | 0.84[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap] |
| rs10781500 | 0.84[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs10781505 | 0.84[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap] |
| rs10781507 | 0.84[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs10781518 | 0.82[CHD][hapmap];0.84[JPT][hapmap] |
| rs10870077 | 0.89[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs10870146 | 0.84[JPT][hapmap] |
| rs10870149 | 0.89[ASW][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10870165 | 0.84[JPT][hapmap] |
| rs10870201 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11145750 | 0.84[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs11145763 | 0.82[ASN][1000 genomes] |
| rs1128905 | 0.89[ASW][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1132005 | 0.84[JPT][hapmap] |
| rs11791262 | 0.80[ASN][1000 genomes] |
| rs11793497 | 0.80[ASN][1000 genomes] |
| rs11794847 | 0.84[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap] |
| rs3087886 | 0.84[JPT][hapmap] |
| rs35670379 | 0.80[ASN][1000 genomes] |
| rs3812550 | 0.81[CEU][hapmap];0.93[GIH][hapmap] |
| rs3812556 | 0.82[CHD][hapmap] |
| rs3812558 | 0.84[CHB][hapmap];0.87[CHD][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs3812560 | 0.83[ASW][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.80[MKK][hapmap];0.80[ASN][1000 genomes] |
| rs3812563 | 0.80[ASN][1000 genomes] |
| rs3812564 | 0.84[CHB][hapmap] |
| rs3812575 | 0.84[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap] |
| rs3812584 | 0.84[JPT][hapmap] |
| rs3829110 | 0.84[CHB][hapmap];0.83[JPT][hapmap] |
| rs3829111 | 0.84[CHB][hapmap];0.84[JPT][hapmap] |
| rs4073153 | 0.86[ASN][1000 genomes] |
| rs4075760 | 0.80[ASN][1000 genomes] |
| rs4077515 | 0.84[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4078099 | 0.80[ASN][1000 genomes] |
| rs4487900 | 0.84[JPT][hapmap] |
| rs9411205 | 0.83[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GPBP1L1 | Distal transcriptional regulation |
| TMEM69 | Distal transcriptional regulation |
| C5orf28 | Distal transcriptional regulation |
| QSOX2 | Distal transcriptional regulation |
| SNORA43 | Distal transcriptional regulation |
| SNHG7 | Distal transcriptional regulation |
| SNORA17 | Distal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| SDCCAG3 | Distal transcriptional regulation |
| PMPCA | Distal transcriptional regulation |
| NOTCH1 | Distal transcriptional regulation |
| ENSG00000237886 | Distal transcriptional regulation |
| MIR4674 | Distal transcriptional regulation |
| C9orf163 | Distal transcriptional regulation |
| CACYBP | Distal transcriptional regulation |
| DNLZ | RNA binding protein mediated regulation |
| CARD9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014