SNP Report
Basic Infomation
| Name | rs10870149 dbSNP |
|---|---|
| Location | chr:9,139254897 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10781505 | 0.88[ASW][hapmap];0.88[LWK][hapmap] |
| rs10781518 | 0.89[YRI][hapmap] |
| rs10781533 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs10870125 | 0.84[CHB][hapmap];0.82[CHD][hapmap] |
| rs10870201 | 0.85[EUR][1000 genomes] |
| rs10870202 | 0.89[ASW][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11145750 | 0.88[ASW][hapmap];0.84[GIH][hapmap] |
| rs11145922 | 0.85[CHB][hapmap];0.85[CHD][hapmap] |
| rs1128905 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3087886 | 0.89[YRI][hapmap] |
| rs3812550 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3812560 | 0.82[ASW][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNLZ | Proximal transcriptional regulation |
| DNLZ | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 12)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014