SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 9)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10870149	0.84[CHB][hapmap];0.82[CHD][hapmap]
rs11145922	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs11145937	0.85[AMR][1000 genomes]
rs11145958	1.00[LWK][hapmap];0.96[MKK][hapmap];0.82[YRI][hapmap]
rs1128905	0.84[CHB][hapmap];0.82[CHD][hapmap]
rs3812550	0.84[CHB][hapmap];0.82[CHD][hapmap]
rs3812561	0.90[MKK][hapmap]
rs3829108	0.85[AMR][1000 genomes]
rs45592338	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
GPSM1	Proximal transcriptional regulation
GPSM1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)