SNP Report
Basic Infomation
| Name | rs3812550 dbSNP |
|---|---|
| Location | chr:9,139252879 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10781533 | 0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs10870125 | 0.84[CHB][hapmap];0.82[CHD][hapmap] |
| rs10870149 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10870201 | 0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10870202 | 0.81[CEU][hapmap];0.93[GIH][hapmap] |
| rs11145750 | 0.86[GIH][hapmap] |
| rs11145922 | 0.84[CHB][hapmap];0.85[CHD][hapmap] |
| rs1128905 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GPSM1 | Proximal transcriptional regulation |
| GPSM1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014