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rVarBase
SNP Report
Basic Infomation
Name
rs11145922  
dbSNP
Location
chr:9,139254317
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10870125
1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs10870149
0.85[CHB][hapmap];0.85[CHD][hapmap]
rs11145958
0.92[LWK][hapmap];0.96[MKK][hapmap];0.82[YRI][hapmap]
rs1128905
0.85[CHB][hapmap];0.84[CHD][hapmap]
rs3812550
0.84[CHB][hapmap];0.85[CHD][hapmap]
rs3812561
0.90[MKK][hapmap]
rSNP related genes
Symbol
Regulation type
DNLZ
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
DNLZ
GTEx
DNLZ
GTEx