SNP Report
Basic Infomation
| Name | rs11145958 dbSNP |
|---|---|
| Location | chr:9,139255073 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10870125 | 1.00[LWK][hapmap];0.96[MKK][hapmap];0.82[YRI][hapmap] |
| rs10870168 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11145769 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11145922 | 0.92[LWK][hapmap];0.96[MKK][hapmap];0.82[YRI][hapmap] |
| rs11145932 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11145960 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11145972 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11145982 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12235378 | 1.00[AMR][1000 genomes] |
| rs28689504 | 0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3812549 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3812553 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3812561 | 1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3812580 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs57052773 | 0.83[AMR][1000 genomes] |
| rs57295785 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59257707 | 1.00[AMR][1000 genomes] |
| rs59902911 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNLZ | Proximal transcriptional regulation |
| DNLZ | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| LOC401560 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014