SNP Report
Basic Infomation
| Name | rs57295785 dbSNP |
|---|---|
| Location | chr:9,139260494 |
| Allele | T/G/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10870168 | 0.82[EUR][1000 genomes] |
| rs11145769 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11145932 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11145958 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11145960 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11145972 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11145982 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12235378 | 0.83[AMR][1000 genomes] |
| rs28689504 | 0.93[EUR][1000 genomes] |
| rs3812549 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3812553 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3812561 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs59257707 | 0.83[AMR][1000 genomes] |
| rs59902911 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs61744202 | 0.88[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNLZ | Proximal transcriptional regulation |
| C9orf163 | Distal transcriptional regulation |
| SNHG7 | Distal transcriptional regulation |
| SNORA17 | Distal transcriptional regulation |
| SDCCAG3 | Distal transcriptional regulation |
| PMPCA | Distal transcriptional regulation |
| CARD9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014