SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11145932	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11145958	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11145960	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11145972	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11145982	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12235378	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3812549	0.83[AMR][1000 genomes]
rs3812553	0.83[AMR][1000 genomes]
rs3812561	0.89[EUR][1000 genomes]
rs3812580	0.96[EUR][1000 genomes]
rs57295785	0.82[EUR][1000 genomes]
rs59257707	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59902911	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PMPCA	Proximal transcriptional regulation
SEC16A	Distal transcriptional regulation
ENSG00000228401	Distal transcriptional regulation
INPP5E	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)