SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 15)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10870168	0.83[AMR][1000 genomes]
rs11145769	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11145932	1.00[AMR][1000 genomes]
rs11145958	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11145960	1.00[AMR][1000 genomes]
rs11145972	1.00[AMR][1000 genomes]
rs11145982	1.00[AMR][1000 genomes]
rs12235378	1.00[AMR][1000 genomes]
rs28689504	0.85[EUR][1000 genomes]
rs3812549	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3812561	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57052773	0.83[AMR][1000 genomes]
rs57295785	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59257707	1.00[AMR][1000 genomes]
rs59902911	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
DNLZ	Proximal transcriptional regulation
SNORA43	Distal transcriptional regulation
SNHG7	Distal transcriptional regulation
SNORA17	Distal transcriptional regulation
NOTCH1	Distal transcriptional regulation
ENSG00000237886	Distal transcriptional regulation
MIR4674	Distal transcriptional regulation
C9orf163	Distal transcriptional regulation
DNLZ	RNA binding protein mediated regulation
CARD9	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)