SNP Report
Name | rs3812553   dbSNP |
---|---|
Location | chr:9,139256495 |
Allele | G/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10870168 | 0.83[AMR][1000 genomes] |
rs11145769 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs11145932 | 1.00[AMR][1000 genomes] |
rs11145958 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs11145960 | 1.00[AMR][1000 genomes] |
rs11145972 | 1.00[AMR][1000 genomes] |
rs11145982 | 1.00[AMR][1000 genomes] |
rs12235378 | 1.00[AMR][1000 genomes] |
rs28689504 | 0.85[EUR][1000 genomes] |
rs3812549 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs3812561 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs57052773 | 0.83[AMR][1000 genomes] |
rs57295785 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs59257707 | 1.00[AMR][1000 genomes] |
rs59902911 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
DNLZ | Proximal transcriptional regulation |
SNORA43 | Distal transcriptional regulation |
SNHG7 | Distal transcriptional regulation |
SNORA17 | Distal transcriptional regulation |
NOTCH1 | Distal transcriptional regulation |
ENSG00000237886 | Distal transcriptional regulation |
MIR4674 | Distal transcriptional regulation |
C9orf163 | Distal transcriptional regulation |
DNLZ | RNA binding protein mediated regulation |
CARD9 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014