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rVarBase
SNP Report
Basic Infomation
Name
rs28689504  
dbSNP
Location
chr:9,139249513
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11145769
0.86[EUR][1000 genomes]
rs11145958
0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812549
0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812553
0.85[EUR][1000 genomes]
rs3812561
0.86[EUR][1000 genomes]
rs3812580
1.00[AMR][1000 genomes]
rs57295785
0.93[EUR][1000 genomes]
rs59902911
0.93[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
GPSM1
Proximal transcriptional regulation
GPSM1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)