SNP Report
Basic Infomation
| Name | rs3812580 dbSNP |
|---|---|
| Location | chr:9,139301960 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10870168 | 0.96[EUR][1000 genomes] |
| rs11145932 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11145958 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs11145960 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11145972 | 0.96[EUR][1000 genomes] |
| rs11145982 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12235378 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs28689504 | 1.00[AMR][1000 genomes] |
| rs3812561 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs59257707 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PMPCA | Proximal transcriptional regulation |
| SDCCAG3 | Proximal transcriptional regulation |
| TGIF1 | Distal transcriptional regulation |
| SDCCAG3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014