SNP Report
Basic Infomation
| Name | rs4075760 dbSNP |
|---|---|
| Location | chr:9,139266697 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10781496 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10781499 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10781500 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10781505 | 0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10781507 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10870077 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10870201 | 0.86[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10870202 | 0.80[ASN][1000 genomes] |
| rs11145750 | 0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11145763 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1132005 | 0.88[ASN][1000 genomes] |
| rs11791262 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11793497 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11794847 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3088081 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs35670379 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3812558 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3812560 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3812563 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3812564 | 0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3812565 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs3812575 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3829110 | 0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3829111 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4073153 | 0.89[ASN][1000 genomes] |
| rs4077515 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4078099 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CARD9 | Proximal transcriptional regulation |
| DNLZ | Distal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| SDCCAG3 | Distal transcriptional regulation |
| PMPCA | Distal transcriptional regulation |
| CARD9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| INPP5E | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014