SNP Report

Basic Infomation

Name	rs3088081 dbSNP
Location	chr:9,139270149
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10781496	0.87[ASN][1000 genomes]
rs10781499	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10781500	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10781505	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10781507	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10781518	0.80[AMR][1000 genomes]
rs10870077	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10870201	0.81[ASN][1000 genomes]
rs11145750	0.82[ASN][1000 genomes]
rs11145763	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1132005	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11791262	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11793497	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11794847	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35670379	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3812558	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3812560	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3812563	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3812564	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3812575	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3829110	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3829111	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4073153	0.85[ASN][1000 genomes]
rs4075760	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4077515	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4078099	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4330804	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SNAPC4	Proximal transcriptional regulation
CARD9	Proximal transcriptional regulation
EGFL7	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)