SNP Report
Basic Infomation
| Name | rs4330804 dbSNP |
|---|---|
| Location | chr:9,139294247 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1051957 | 0.80[AMR][1000 genomes] |
| rs10781500 | 0.81[EUR][1000 genomes] |
| rs10781505 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10781507 | 0.82[EUR][1000 genomes] |
| rs10781518 | 0.86[AMR][1000 genomes] |
| rs1132005 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11791262 | 0.82[EUR][1000 genomes] |
| rs11793497 | 0.82[EUR][1000 genomes] |
| rs11794847 | 0.82[EUR][1000 genomes] |
| rs3088081 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs35670379 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs3812558 | 0.80[EUR][1000 genomes] |
| rs3812560 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3812563 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs3812564 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs3812575 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs3829111 | 0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SNAPC4 | Proximal transcriptional regulation |
| EMC9 | Distal transcriptional regulation |
| SEC16A | Distal transcriptional regulation |
| C9orf163 | Distal transcriptional regulation |
| PHPT1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| INPP5E | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014