SNP Report
Basic Infomation
| Name | rs11145917 dbSNP |
|---|---|
| Location | chr:9,139302200 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10870139 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs10870172 | 0.92[ASN][1000 genomes] |
| rs11145910 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs11145916 | 0.94[ASN][1000 genomes] |
| rs11145974 | 1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[ASN][1000 genomes] |
| rs11145986 | 0.92[ASN][1000 genomes] |
| rs11146021 | 0.86[ASN][1000 genomes] |
| rs1130640 | 0.92[ASN][1000 genomes] |
| rs1135314 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13295852 | 0.94[ASN][1000 genomes] |
| rs33982662 | 0.86[ASN][1000 genomes] |
| rs34302850 | 0.84[ASN][1000 genomes] |
| rs34619169 | 0.81[ASN][1000 genomes] |
| rs34985258 | 0.86[ASN][1000 genomes] |
| rs35531907 | 0.86[ASN][1000 genomes] |
| rs35873563 | 0.89[ASN][1000 genomes] |
| rs3812578 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs3923776 | 0.84[ASN][1000 genomes] |
| rs4400499 | 1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes] |
| rs4413892 | 0.86[ASN][1000 genomes] |
| rs4418446 | 0.89[ASN][1000 genomes] |
| rs563 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PMPCA | Proximal transcriptional regulation |
| SDCCAG3 | Proximal transcriptional regulation |
| TGIF1 | Distal transcriptional regulation |
| SDCCAG3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014