SNP Report
Basic Infomation
| Name | rs563 dbSNP |
|---|---|
| Location | chr:9,139296485 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10781506 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10870139 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11145889 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11145890 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11145891 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11145910 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11145917 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs11145974 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap] |
| rs11146021 | 0.85[JPT][hapmap];0.86[MEX][hapmap] |
| rs1135314 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs3812555 | 0.81[CEU][hapmap] |
| rs3812578 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs3812594 | 0.85[JPT][hapmap] |
| rs3812595 | 0.85[JPT][hapmap] |
| rs3923776 | 0.85[JPT][hapmap] |
| rs4075078 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4320648 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4400499 | 0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap] |
| rs4413892 | 0.85[JPT][hapmap] |
| rs9314867 | 0.85[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SNAPC4 | Proximal transcriptional regulation |
| SDCCAG3 | Proximal transcriptional regulation |
| C9orf163 | Distal transcriptional regulation |
| SDCCAG3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 12)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014