SNP Report

Basic Infomation

Name	rs3812595 dbSNP
Location	chr:9,139369062
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10870139	0.85[JPT][hapmap]
rs11145910	0.85[JPT][hapmap]
rs11145974	0.85[JPT][hapmap]
rs11146021	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs1135314	0.85[JPT][hapmap]
rs11999525	1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11999532	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11999609	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12002854	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12551527	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12555241	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13283788	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13290734	0.93[EUR][1000 genomes]
rs13295248	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13301660	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2229974	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs3124591	0.83[ASN][1000 genomes]
rs33982662	0.88[EUR][1000 genomes]
rs34302850	0.84[EUR][1000 genomes]
rs34376913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34619169	0.83[EUR][1000 genomes]
rs34936112	0.80[EUR][1000 genomes]
rs34985258	0.91[EUR][1000 genomes]
rs35135227	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35526483	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35531907	0.91[EUR][1000 genomes]
rs35857370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35873563	0.87[EUR][1000 genomes]
rs36101132	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812578	0.85[JPT][hapmap]
rs3812591	0.96[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3812594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3923776	0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs4382584	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4400499	0.85[JPT][hapmap]
rs4413892	1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs55824202	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs563	0.85[JPT][hapmap]
rs57994353	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66477686	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67220311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72775772	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72775778	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314867	1.00[CHB][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SEC16A	Distal transcriptional regulation
MIR126	Distal transcriptional regulation
SEC16A	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 11)

eQTL related gene	Source
INPP5E	Pritchard
TMEM141	SCAN
NPDC1	SCAN
RXRA	SCAN
UAP1L1	SCAN
NRARP	SCAN
SEC16A	SCAN
INPP5E	GTEx
INPP5E	GTEx
INPP5E	GTEx
INPP5E	GTEx