SNP Report
Name | rs3812595   dbSNP |
---|---|
Location | chr:9,139369062 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10870139 | 0.85[JPT][hapmap] |
rs11145910 | 0.85[JPT][hapmap] |
rs11145974 | 0.85[JPT][hapmap] |
rs11146021 | 0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes] |
rs1135314 | 0.85[JPT][hapmap] |
rs11999525 | 1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11999532 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11999609 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12002854 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs12551527 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12555241 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs13283788 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs13290734 | 0.93[EUR][1000 genomes] |
rs13295248 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs13301660 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2229974 | 0.85[JPT][hapmap];0.83[ASN][1000 genomes] |
rs3124591 | 0.83[ASN][1000 genomes] |
rs33982662 | 0.88[EUR][1000 genomes] |
rs34302850 | 0.84[EUR][1000 genomes] |
rs34376913 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs34619169 | 0.83[EUR][1000 genomes] |
rs34936112 | 0.80[EUR][1000 genomes] |
rs34985258 | 0.91[EUR][1000 genomes] |
rs35135227 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs35526483 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs35531907 | 0.91[EUR][1000 genomes] |
rs35857370 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs35873563 | 0.87[EUR][1000 genomes] |
rs36101132 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3812578 | 0.85[JPT][hapmap] |
rs3812591 | 0.96[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs3812594 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs3923776 | 0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes] |
rs4382584 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4400499 | 0.85[JPT][hapmap] |
rs4413892 | 1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
rs55824202 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs563 | 0.85[JPT][hapmap] |
rs57994353 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs66477686 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs67220311 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72775772 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs72775778 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9314867 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Symbol | Regulation type |
---|---|
SEC16A | Distal transcriptional regulation |
MIR126 | Distal transcriptional regulation |
SEC16A | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014