SNP Report

Basic Infomation

Name	rs67220311 dbSNP
Location	chr:9,139376668
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11146021	0.93[EUR][1000 genomes]
rs11999525	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11999532	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11999609	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12002854	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12551527	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12555241	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13283788	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13290734	0.93[EUR][1000 genomes]
rs13295248	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13301660	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2229974	0.83[ASN][1000 genomes]
rs3124591	0.83[ASN][1000 genomes]
rs33982662	0.88[EUR][1000 genomes]
rs34302850	0.84[EUR][1000 genomes]
rs34376913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34619169	0.83[EUR][1000 genomes]
rs34936112	0.80[EUR][1000 genomes]
rs34985258	0.91[EUR][1000 genomes]
rs35135227	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35526483	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35531907	0.91[EUR][1000 genomes]
rs35857370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35873563	0.87[EUR][1000 genomes]
rs36101132	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812591	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3812594	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3812595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923776	0.91[EUR][1000 genomes]
rs4382584	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4413892	0.93[EUR][1000 genomes]
rs55824202	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57994353	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66477686	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72775772	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72775778	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SEC16A	Proximal transcriptional regulation
C9orf163	Proximal transcriptional regulation
STRIP2	Distal transcriptional regulation
GPSM1	Distal transcriptional regulation
SDCCAG3	Distal transcriptional regulation
PMPCA	Distal transcriptional regulation
INPP5E	Distal transcriptional regulation
SEC16A	Distal transcriptional regulation
EGFL7	Distal transcriptional regulation
SNORA17	Distal transcriptional regulation
SNHG7	Distal transcriptional regulation
FAM69B	Distal transcriptional regulation
AGPAT2	Distal transcriptional regulation
DNLZ	Distal transcriptional regulation
CARD9	Distal transcriptional regulation
ENSG00000228401	Distal transcriptional regulation
NOTCH1	Distal transcriptional regulation
ENSG00000237886	Distal transcriptional regulation
MIR4674	Distal transcriptional regulation
TMEM141	Distal transcriptional regulation
ENSG00000227512	Distal transcriptional regulation
MIR4673	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)