SNP Report
Basic Infomation
| Name | rs2229974 dbSNP |
|---|---|
| Location | chr:9,139391636 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11146021 | 0.85[JPT][hapmap] |
| rs12555241 | 0.85[ASN][1000 genomes] |
| rs13283788 | 0.85[ASN][1000 genomes] |
| rs13295248 | 0.85[ASN][1000 genomes] |
| rs3124591 | 0.95[ASN][1000 genomes] |
| rs3124592 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3124593 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs34376913 | 0.81[ASN][1000 genomes] |
| rs35135227 | 0.85[ASN][1000 genomes] |
| rs36101132 | 0.83[ASN][1000 genomes] |
| rs3812591 | 1.00[JPT][hapmap] |
| rs3812594 | 0.85[JPT][hapmap] |
| rs3812595 | 0.85[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs3923776 | 1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs4382584 | 0.87[ASN][1000 genomes] |
| rs4413892 | 1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs67220311 | 0.83[ASN][1000 genomes] |
| rs72775778 | 0.81[ASN][1000 genomes] |
| rs7852557 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9314867 | 0.85[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NOTCH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014