SNP Report
Basic Infomation
| Name | rs34376913 dbSNP |
|---|---|
| Location | chr:9,139378914 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11146021 | 0.93[EUR][1000 genomes] |
| rs11999525 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11999532 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11999609 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12002854 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs12551527 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12555241 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13283788 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13290734 | 0.93[EUR][1000 genomes] |
| rs13295248 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13301660 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2229974 | 0.81[ASN][1000 genomes] |
| rs3124591 | 0.81[ASN][1000 genomes] |
| rs33982662 | 0.88[EUR][1000 genomes] |
| rs34302850 | 0.84[EUR][1000 genomes] |
| rs34619169 | 0.83[EUR][1000 genomes] |
| rs34936112 | 0.80[EUR][1000 genomes] |
| rs34985258 | 0.91[EUR][1000 genomes] |
| rs35135227 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35526483 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35531907 | 0.91[EUR][1000 genomes] |
| rs35857370 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35873563 | 0.87[EUR][1000 genomes] |
| rs36101132 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3812591 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3812594 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3812595 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3923776 | 0.91[EUR][1000 genomes] |
| rs4382584 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4413892 | 0.93[EUR][1000 genomes] |
| rs55824202 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs57994353 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs66477686 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs67220311 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72775772 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72775778 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COA6 | Distal transcriptional regulation |
| ENSG00000231663 | Distal transcriptional regulation |
| RPLP0 | Distal transcriptional regulation |
| PXN-AS1 | Distal transcriptional regulation |
| APEH | Distal transcriptional regulation |
| GPSM1 | Distal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| SNORA17 | Distal transcriptional regulation |
| SNHG7 | Distal transcriptional regulation |
| FAM69B | Distal transcriptional regulation |
| ENSG00000221693 | Distal transcriptional regulation |
| AGPAT2 | Distal transcriptional regulation |
| SNORA43 | Distal transcriptional regulation |
| NOTCH1 | Distal transcriptional regulation |
| ENSG00000237886 | Distal transcriptional regulation |
| MIR4674 | Distal transcriptional regulation |
| HIST2H2BE | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| BOLA1 | Distal transcriptional regulation |
| ENSG00000267845 | Distal transcriptional regulation |
| SNAPC4 | Distal transcriptional regulation |
| SDCCAG3 | Distal transcriptional regulation |
| PMPCA | Distal transcriptional regulation |
| INPP5E | Distal transcriptional regulation |
| SEC16A | Distal transcriptional regulation |
| MIR4673 | Distal transcriptional regulation |
| TMEM141 | Distal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| ING5 | Distal transcriptional regulation |
| DNLZ | Distal transcriptional regulation |
| ENSG00000227512 | Distal transcriptional regulation |
| C9orf163 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| INPP5E | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014