SNP Report
Basic Infomation
| Name | rs34936112 dbSNP |
|---|---|
| Location | chr:9,139327062 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10870172 | 0.84[ASN][1000 genomes] |
| rs11145910 | 0.81[ASN][1000 genomes] |
| rs11145916 | 0.81[ASN][1000 genomes] |
| rs11145974 | 0.84[ASN][1000 genomes] |
| rs11145986 | 0.84[ASN][1000 genomes] |
| rs11146021 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1130640 | 0.84[ASN][1000 genomes] |
| rs11999532 | 0.80[EUR][1000 genomes] |
| rs11999609 | 0.80[EUR][1000 genomes] |
| rs13290734 | 0.85[EUR][1000 genomes] |
| rs13295852 | 0.81[ASN][1000 genomes] |
| rs13301660 | 0.81[EUR][1000 genomes] |
| rs33982662 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs34302850 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs34376913 | 0.80[EUR][1000 genomes] |
| rs34619169 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34985258 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs35526483 | 0.80[EUR][1000 genomes] |
| rs35531907 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs35873563 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs36101132 | 0.80[EUR][1000 genomes] |
| rs3812578 | 0.81[ASN][1000 genomes] |
| rs3812594 | 0.80[EUR][1000 genomes] |
| rs3812595 | 0.80[EUR][1000 genomes] |
| rs3923776 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4413892 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs57994353 | 0.85[EUR][1000 genomes] |
| rs66477686 | 0.80[EUR][1000 genomes] |
| rs67220311 | 0.80[EUR][1000 genomes] |
| rs72775768 | 0.91[ASN][1000 genomes] |
| rs73566945 | 0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000263931 | Distal transcriptional regulation |
| ENSG00000266411 | Distal transcriptional regulation |
| INPP5E | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| INPP5E | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014