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rVarBase
SNP Report
Basic Infomation
Name
rs3124591  
dbSNP
Location
chr:9,139390397
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12555241
0.85[ASN][1000 genomes]
rs13283788
0.85[ASN][1000 genomes]
rs13295248
0.85[ASN][1000 genomes]
rs2229974
0.95[ASN][1000 genomes]
rs34376913
0.81[ASN][1000 genomes]
rs35135227
0.85[ASN][1000 genomes]
rs36101132
0.83[ASN][1000 genomes]
rs3812595
0.83[ASN][1000 genomes]
rs4382584
0.87[ASN][1000 genomes]
rs67220311
0.83[ASN][1000 genomes]
rs72775778
0.81[ASN][1000 genomes]
rs7852557
0.86[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
NOTCH1
Proximal transcriptional regulation
C9orf163
Distal transcriptional regulation
NOTCH1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)