SNP Report
Name | rs3812591   dbSNP |
---|---|
Location | chr:9,139341612 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10870139 | 0.83[CEU][hapmap] |
rs10870166 | 0.84[ASW][hapmap] |
rs11145974 | 1.00[ASW][hapmap];0.83[CEU][hapmap] |
rs11146021 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes] |
rs1130635 | 0.84[ASW][hapmap];0.80[CEU][hapmap] |
rs11999525 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs11999532 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs11999609 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12002854 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs12551527 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12555241 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs13283788 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs13290734 | 0.93[EUR][1000 genomes] |
rs13295248 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs13301660 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2229974 | 1.00[JPT][hapmap] |
rs3125002 | 1.00[YRI][hapmap] |
rs33982662 | 0.86[EUR][1000 genomes] |
rs34302850 | 0.83[EUR][1000 genomes] |
rs34376913 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs34619169 | 0.84[EUR][1000 genomes] |
rs34985258 | 0.92[EUR][1000 genomes] |
rs35135227 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs35288226 | 0.81[ASN][1000 genomes] |
rs35526483 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs35531907 | 0.92[EUR][1000 genomes] |
rs35857370 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs35873563 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs36101132 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs3812594 | 0.84[ASW][hapmap];0.96[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs3812595 | 0.96[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs3812603 | 0.82[YRI][hapmap] |
rs3812605 | 0.82[YRI][hapmap] |
rs3923776 | 0.96[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4382584 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4400499 | 0.83[CEU][hapmap] |
rs4413892 | 0.85[JPT][hapmap];0.94[EUR][1000 genomes] |
rs4489420 | 0.82[YRI][hapmap] |
rs55824202 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs57994353 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs66477686 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs67220311 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs72775772 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs72775778 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9314867 | 0.85[JPT][hapmap] |
Symbol | Regulation type |
---|---|
SEC16A | Proximal transcriptional regulation |
C9orf163 | Distal transcriptional regulation |
SEC16A | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014