SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 17)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10521	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11145764	0.92[ASN][1000 genomes]
rs3124594	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3124595	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3124596	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3124597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3124598	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3124999	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs3125000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125002	0.91[JPT][hapmap];0.83[YRI][hapmap]
rs3812591	0.82[YRI][hapmap]
rs3812604	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3812605	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3829116	0.97[ASN][1000 genomes]
rs4880054	0.80[ASN][1000 genomes]
rs4880098	0.93[ASN][1000 genomes]
rs9411206	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
NOTCH1	Proximal transcriptional regulation
C9orf163	Distal transcriptional regulation
NOTCH1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)