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rVarBase
SNP Report
Basic Infomation
Name
rs4880054  
dbSNP
Location
chr:9,139394573
Allele
T/G
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10521
0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11145764
0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs3124594
0.96[ASN][1000 genomes]
rs3124595
0.95[ASN][1000 genomes]
rs3124597
0.80[ASN][1000 genomes]
rs3124999
0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3125000
0.80[ASN][1000 genomes]
rs3812603
0.80[ASN][1000 genomes]
rs3812604
0.81[ASN][1000 genomes]
rs3812605
0.80[ASN][1000 genomes]
rs3829116
0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4880098
0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
NOTCH1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)