SNP Report
Basic Infomation
| Name | rs4880098 dbSNP |
|---|---|
| Location | chr:9,139400904 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10521 | 0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11145764 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3124594 | 0.81[ASN][1000 genomes] |
| rs3124595 | 0.82[ASN][1000 genomes] |
| rs3124596 | 0.86[ASN][1000 genomes] |
| rs3124597 | 0.93[ASN][1000 genomes] |
| rs3124598 | 0.92[ASN][1000 genomes] |
| rs3124999 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3125000 | 0.93[ASN][1000 genomes] |
| rs3812603 | 0.93[ASN][1000 genomes] |
| rs3812604 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3812605 | 0.93[ASN][1000 genomes] |
| rs3829116 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4880054 | 0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NOTCH1 | Proximal transcriptional regulation |
| C9orf163 | Distal transcriptional regulation |
| NOTCH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014