SNP Report
Basic Infomation
| Name | rs3124596 dbSNP |
|---|---|
| Location | chr:9,139401504 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10521 | 0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs11145764 | 0.88[ASN][1000 genomes] |
| rs3124594 | 0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3124595 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3124597 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3124598 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3124999 | 0.91[CHD][hapmap];0.90[JPT][hapmap] |
| rs3125000 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3125002 | 0.90[JPT][hapmap] |
| rs3812603 | 1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3812604 | 0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs3812605 | 0.82[CHD][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3829116 | 0.89[ASN][1000 genomes] |
| rs4880098 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NOTCH1 | Proximal transcriptional regulation |
| C9orf163 | Distal transcriptional regulation |
| NOTCH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014