SNP Report
Basic Infomation
| Name | rs3125002 dbSNP |
|---|---|
| Location | chr:9,139405361 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10521 | 0.90[JPT][hapmap] |
| rs3124594 | 0.90[JPT][hapmap] |
| rs3124596 | 0.90[JPT][hapmap] |
| rs3124598 | 0.89[AFR][1000 genomes] |
| rs3124600 | 0.89[ASN][1000 genomes] |
| rs3124999 | 0.81[JPT][hapmap] |
| rs3125001 | 0.94[ASN][1000 genomes] |
| rs3812591 | 1.00[YRI][hapmap] |
| rs3812594 | 0.82[YRI][hapmap] |
| rs3812603 | 0.91[JPT][hapmap];0.83[YRI][hapmap] |
| rs3812604 | 0.90[JPT][hapmap] |
| rs3812605 | 0.83[YRI][hapmap] |
| rs3812608 | 0.86[ASN][1000 genomes] |
| rs4489420 | 0.83[YRI][hapmap] |
| rs9411206 | 0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C9orf163 | Distal transcriptional regulation |
| NOTCH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014