SNP Report
Basic Infomation
| Name | rs3124999 dbSNP |
|---|---|
| Location | chr:9,139395473 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10521 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11145764 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3124594 | 0.86[CHD][hapmap];0.90[JPT][hapmap] |
| rs3124596 | 0.91[CHD][hapmap];0.90[JPT][hapmap] |
| rs3124597 | 0.85[ASN][1000 genomes] |
| rs3124598 | 0.87[ASN][1000 genomes] |
| rs3125000 | 0.85[ASN][1000 genomes] |
| rs3125002 | 0.81[JPT][hapmap] |
| rs3812603 | 0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs3812604 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs3812605 | 0.90[CHD][hapmap];0.85[ASN][1000 genomes] |
| rs3829116 | 0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4880054 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4880098 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C9orf163 | Distal transcriptional regulation |
| NOTCH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014