SNP Report
Basic Infomation
| Name | rs1135314 dbSNP |
|---|---|
| Location | chr:9,139258462 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10781506 | 0.87[ASN][1000 genomes] |
| rs10870139 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11145910 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11145917 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11145974 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11146021 | 0.85[JPT][hapmap] |
| rs28679497 | 0.85[ASN][1000 genomes] |
| rs3812578 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs3812594 | 0.85[JPT][hapmap] |
| rs3812595 | 0.85[JPT][hapmap] |
| rs3923776 | 0.85[JPT][hapmap] |
| rs4075078 | 0.92[ASN][1000 genomes] |
| rs4400499 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4413892 | 0.85[JPT][hapmap] |
| rs563 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs61386106 | 0.88[ASN][1000 genomes] |
| rs9314867 | 0.85[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CARD9 | Proximal transcriptional regulation |
| DNLZ | Proximal transcriptional regulation |
| DHTKD1 | Distal transcriptional regulation |
| SRSF6 | Distal transcriptional regulation |
| KIFC1 | Distal transcriptional regulation |
| PMPCA | Distal transcriptional regulation |
| QSOX2 | Distal transcriptional regulation |
| SNORA43 | Distal transcriptional regulation |
| SNHG7 | Distal transcriptional regulation |
| SNORA17 | Distal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| ENSG00000266402 | Distal transcriptional regulation |
| SNORD104 | Distal transcriptional regulation |
| SNORA76 | Distal transcriptional regulation |
| SDCCAG3 | Distal transcriptional regulation |
| C9orf163 | Distal transcriptional regulation |
| KIAA1984 | Distal transcriptional regulation |
| RABL6 | Distal transcriptional regulation |
| CARD9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014