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rVarBase
SNP Report
Basic Infomation
Name
rs10781506  
dbSNP
Location
chr:9,139271461
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11145889
0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11145890
0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11145891
0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11145910
0.81[AMR][1000 genomes]
rs1135314
0.87[ASN][1000 genomes]
rs3812578
0.82[AMR][1000 genomes]
rs4075078
0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4320648
0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs563
0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CARD9
Proximal transcriptional regulation
CCDC18
Distal transcriptional regulation
TMED5
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)