SNP Report
Basic Infomation
| Name | rs40401 dbSNP |
|---|---|
| Location | chr:5,131396478 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 74)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs101194 | 0.83[CEU][hapmap] |
| rs12656759 | 0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs1500115 | 0.83[CEU][hapmap] |
| rs154728 | 0.83[CEU][hapmap] |
| rs156033 | 0.83[CEU][hapmap] |
| rs156036 | 0.88[CEU][hapmap] |
| rs173812 | 0.83[CEU][hapmap] |
| rs246755 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs246844 | 0.82[CHB][hapmap] |
| rs246998 | 0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs246999 | 0.82[ASN][1000 genomes] |
| rs247000 | 0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs247002 | 0.83[CHB][hapmap];0.91[JPT][hapmap] |
| rs247004 | 0.83[CHB][hapmap];0.91[JPT][hapmap] |
| rs247217 | 0.97[ASN][1000 genomes] |
| rs253941 | 0.83[CEU][hapmap] |
| rs253943 | 0.83[CEU][hapmap] |
| rs253944 | 0.82[CHB][hapmap];0.90[JPT][hapmap] |
| rs253945 | 0.83[CHB][hapmap];0.91[JPT][hapmap] |
| rs253946 | 0.83[CHB][hapmap];0.91[JPT][hapmap] |
| rs253947 | 0.83[CHB][hapmap];0.91[JPT][hapmap] |
| rs253948 | 0.86[JPT][hapmap] |
| rs253949 | 0.82[JPT][hapmap] |
| rs25879 | 0.84[CEU][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs25881 | 0.80[TSI][hapmap] |
| rs25886 | 0.81[EUR][1000 genomes] |
| rs269899 | 0.83[CEU][hapmap] |
| rs27348 | 0.94[CEU][hapmap];0.94[TSI][hapmap] |
| rs31401 | 0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs31473 | 1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs31474 | 1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs31477 | 0.94[CEU][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs31480 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs31481 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs380182 | 0.83[CEU][hapmap] |
| rs3914023 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs3914024 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs3914025 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs3914026 | 0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs3916444 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs407204 | 0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs417585 | 0.83[CHB][hapmap];0.91[JPT][hapmap] |
| rs421377 | 0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs422090 | 0.82[CHB][hapmap];0.91[JPT][hapmap] |
| rs422130 | 0.91[JPT][hapmap] |
| rs423957 | 0.82[CHB][hapmap];0.91[JPT][hapmap] |
| rs426991 | 0.81[ASN][1000 genomes] |
| rs440970 | 0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs449915 | 0.83[CHB][hapmap];0.91[JPT][hapmap] |
| rs45511 | 0.82[CEU][hapmap] |
| rs4705909 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs4705910 | 0.92[ASN][1000 genomes] |
| rs4705911 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs4705912 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs4705913 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs476428 | 0.83[CEU][hapmap] |
| rs490054 | 0.82[CEU][hapmap] |
| rs555662 | 0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs559971 | 0.83[CEU][hapmap] |
| rs587759 | 0.83[CEU][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs615305 | 0.89[CEU][hapmap] |
| rs635164 | 0.83[CEU][hapmap] |
| rs6596041 | 0.83[CEU][hapmap] |
| rs6596048 | 0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs6596049 | 0.92[ASN][1000 genomes] |
| rs6596050 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs683749 | 0.83[CEU][hapmap] |
| rs687429 | 0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs6877405 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs687816 | 0.83[CEU][hapmap] |
| rs71970 | 0.90[JPT][hapmap] |
| rs77937 | 0.91[JPT][hapmap] |
| rs77938 | 0.90[JPT][hapmap] |
| rs804059 | 0.83[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RNA5SP192 | Distal transcriptional regulation |
| ENSG00000235775 | Distal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| MIR3936 | Distal transcriptional regulation |
| IL3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014