SNP Report

Basic Infomation

Name	rs27348 dbSNP
Location	chr:5,131407139
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs141249	0.82[CEU][hapmap]
rs1500115	0.88[CEU][hapmap]
rs152047	0.83[CEU][hapmap]
rs152051	0.83[CEU][hapmap]
rs152053	0.83[CEU][hapmap]
rs152055	0.83[CEU][hapmap]
rs152198	0.83[CEU][hapmap]
rs154484	0.83[CEU][hapmap]
rs156036	0.82[CEU][hapmap]
rs156057	0.83[CEU][hapmap]
rs156059	0.83[CEU][hapmap]
rs159903	0.83[CEU][hapmap]
rs159905	0.83[CEU][hapmap]
rs173812	0.88[CEU][hapmap]
rs246351	0.83[CEU][hapmap]
rs246844	0.83[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs246998	0.83[CEU][hapmap]
rs247004	0.83[CEU][hapmap]
rs253941	0.88[CEU][hapmap]
rs253943	0.88[CEU][hapmap]
rs253949	0.83[CEU][hapmap]
rs2550973	0.82[CEU][hapmap]
rs25879	0.89[CEU][hapmap];0.81[GIH][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs25881	0.82[GIH][hapmap]
rs25886	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs301834	0.83[CEU][hapmap]
rs31473	0.94[CEU][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs31474	0.94[CEU][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs31477	1.00[CEU][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs31480	0.94[CEU][hapmap]
rs31481	0.83[ASW][hapmap]
rs380182	0.88[CEU][hapmap]
rs3916444	0.83[CEU][hapmap]
rs40401	0.94[CEU][hapmap];0.94[TSI][hapmap]
rs417585	0.83[CEU][hapmap]
rs422130	0.83[CEU][hapmap]
rs45511	0.87[CEU][hapmap]
rs473753	0.83[CEU][hapmap]
rs476428	0.88[CEU][hapmap]
rs490054	0.88[CEU][hapmap]
rs555662	0.83[CEU][hapmap]
rs559971	0.88[CEU][hapmap]
rs615305	0.94[CEU][hapmap]
rs635164	0.88[CEU][hapmap]
rs683749	0.88[CEU][hapmap]
rs687816	0.88[CEU][hapmap]
rs71970	0.81[CEU][hapmap]
rs7708140	0.82[CEU][hapmap]
rs804059	0.88[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
CSF2	Proximal transcriptional regulation
ENSG00000253067	Distal transcriptional regulation
P4HA2	Distal transcriptional regulation
ENSG00000224431	Distal transcriptional regulation
ENSG00000239642	Distal transcriptional regulation
RAD50	Distal transcriptional regulation
C5orf56	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 5)

eQTL related gene	Source
SARS2	SCAN
P4HA2	seeQTL
FAR2	seeQTL
RAPGEF6	SCAN
P4HA2	SCAN